STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yncUncharacterized protein (Ync); Annotated by: sma3s; COG2253. (306 aa)    
Predicted Functional Partners:
AMG73056.1
Protein of unknwon function (DUF2893); Annotated by: sma3s.
 
   
 0.962
AMG72611.1
Uncharacterized protein; Annotated by: sma3s.
 
   
 0.527
traA2
Conjugal transfer protein TraA; Annotated by: sma3s; COG0507.
 
   
 0.517
traA3
Conjugal transfer protein TraA; Annotated by: sma3s; COG0507.
 
   
 0.510
AMG73055.1
Putative LuxR family transcriptional regulator; Annotated by: sma3s; COG2771.
       0.447
traA
Conjugal transfer protein TraA; Annotated by: sma3s; COG0507.
 
   
 0.416
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.