STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG73062.1Uncharacterized protein; Annotated by: sma3s. (194 aa)    
Predicted Functional Partners:
AMG73063.1
Thioredoxin; Annotated by: sma3s; COG0526.
       0.782
traF2
Type IV secretory pathway protease TraF-like protein; Annotated by: sma3s; COG4959.
       0.778
trbC2
Conjugal transfer protein TrbC; Annotated by: sma3s.
       0.773
traN2
Conjugal transfer protein TraN; Annotated by: sma3s.
       0.773
AMG73067.1
Uncharacterized protein; Annotated by: sma3s.
       0.773
traH
Conjugal transfer protein TraH; Annotated by: sma3s.
       0.642
traG2
DNA transfer protein; Annotated by: sma3s.
       0.629
traU2
Conjugal transfer protein; Annotated by: sma3s.
       0.401
traW2
Conjugal transfer protein TraW; Annotated by: sma3s.
       0.401
AMG73070.1
Uncharacterized protein; Annotated by: sma3s.
       0.401
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.