STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG73093.1Peptidase S41; Annotated by: sma3s; COG0793. (485 aa)    
Predicted Functional Partners:
ppx
Exopolyphosphatase; Annotated by: sma3s; COG0248.
  
    0.742
rlmE
Ribosomal RNA large subunit methyltransferase E; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
       0.723
AMG76305.1
Uncharacterized protein; Annotated by: sma3s.
 
     0.536
AMG75310.1
OmpA/MotB protein; Annotated by: sma3s; COG2885.
 
 
 
 0.499
AMG73399.1
Uncharacterized protein; Annotated by: sma3s; COG4704.
  
     0.461
pheT
Phenylalanine--tRNA ligase beta subunit; Annotated by: sma3s; COG0072; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.452
AMG73029.1
Putative heavy metal efflux system protein; Annotated by: sma3s; COG1538.
 
   
 0.441
AMG73179.1
Peptidase M23B; Annotated by: sma3s; COG4942.
  
  
 0.404
AMG73097.1
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; Annotated by: sma3s; COG4246.
 
     0.403
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.