STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG73351.1TonB-dependent receptor; Annotated by: sma3s; COG4771. (1150 aa)    
Predicted Functional Partners:
AMG74962.1
TonB-dependent receptor; Annotated by: sma3s; COG1629.
  
  
 0.717
AMG76336.1
TonB-dependent Receptor Plug domain protein; Annotated by: sma3s; COG4206; COG1629.
  
  
 0.712
AMG73374.1
TonB-dependent receptor; Annotated by: sma3s; COG4771.
  
 
 0.660
AMG74009.1
TonB-dependent receptor; Annotated by: sma3s; COG1629.
  
 
 0.654
AMG76493.1
PepSY-associated TM helix; Annotated by: sma3s; COG3182.
 
   
 0.617
AMG73200.1
Uncharacterized protein; Annotated by: sma3s; COG4206.
  
 
 0.606
AMG73489.1
TonB dependent receptor; Annotated by: manual blastp; COG4206.
  
  
 0.586
AMG75941.1
Iron complex outermembrane recepter protein; Annotated by: sma3s; COG4206.
  
 
 0.586
AMG73276.1
OmpA/MotB; Annotated by: sma3s; COG2885.
    
 0.572
cirA
TonB-dependent receptor; Annotated by: sma3s; COG4206.
  
 
 0.564
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.