STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG73355.1Uncharacterized protein; Annotated by: sma3s; COG4649. (256 aa)    
Predicted Functional Partners:
AMG73356.1
Pyrrolo-quinoline quinone; Annotated by: sma3s; COG1520.
 
     0.893
engA
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.787
AMG73358.1
Putative redox protein; Annotated by: sma3s; COG0425; Belongs to the sulfur carrier protein TusA family.
       0.704
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.697
AMG72789.1
Secreted (Periplasmic)-like protein; Annotated by: sma3s; COG5468.
  
     0.582
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.563
AMG76241.1
Uncharacterized protein; Annotated by: sma3s.
  
     0.559
AMG73419.1
Uncharacterized protein; Annotated by: sma3s; COG5465.
  
     0.541
AMG73359.1
Hpt domain-containing protein; Annotated by: sma3s.
       0.526
AMG74938.1
Uncharacterized protein; Annotated by: sma3s.
  
    0.524
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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