STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG73376.1D-aminoacylase; Annotated by: sma3s; COG3653. (566 aa)    
Predicted Functional Partners:
AMG73375.1
Peptidase S11; Annotated by: manual blastp; COG1686.
     
 0.737
AMG73374.1
TonB-dependent receptor; Annotated by: sma3s; COG4771.
     
 0.575
AMG73377.1
Extracellular serine protease; Annotated by: sma3s; COG4625.
       0.570
dmpA
D-aminopeptidase; Annotated by: sma3s; COG3191.
  
     0.503
abgB
Amidohydrolase; Annotated by: sma3s; COG1473.
 
     0.466
yjgF
Endoribonuclease L-PSP; Annotated by: sma3s; COG0251.
     
 0.440
AMG73379.1
LysR family transcriptional regulator; Annotated by: sma3s; COG0583; Belongs to the LysR transcriptional regulatory family.
       0.430
AMG75936.1
Amidohydrolase family enzyme; Annotated by: sma3s; COG1228; COG0044.
 
     0.421
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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