STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG73457.1Arabinose efflux permease family protein; Annotated by: sma3s; COG2814. (483 aa)    
Predicted Functional Partners:
emrA
Secretion protein HlyD; Annotated by: sma3s; COG1566.
 
 0.766
emrA2
Annotated by: sma3s; COG1566.
 
 0.760
rmrA
Multidrug ABC transporter permease; Annotated by: sma3s; COG1566.
 
 0.748
farA
HlyD family secretion protein; Annotated by: sma3s; COG1566.
 
 0.714
AMG73456.1
TonB-dependent receptor; Annotated by: manual blastp; COG1629.
     
 0.545
ydhJ
HlyD family secretion protein; Annotated by: sma3s; COG1566; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.493
pltI
Secretion protein HlyD family protein; Annotated by: sma3s; COG1566.
 
 0.456
bcr
Drug resistance transporter, Bcr/CflA subfamily; Annotated by: sma3s; COG2814.
  
   
 0.414
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.