STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atoBThiolase; Annotated by: sma3s; COG0183; Belongs to the thiolase-like superfamily. Thiolase family. (389 aa)    
Predicted Functional Partners:
fadB
3-hydroxyacyl-CoA dehydrogenase; Annotated by: sma3s; COG1250.
  
 0.961
thnL
Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase-like protein; Annotated by: sma3s; COG1250; COG1024.
  
 0.961
ehhadh
3-hydroxyacyl-CoA dehydrogenase; Annotated by: sma3s; COG1250; COG1024; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.961
AMG73462.1
Putative nucleic-acid-binding protein containing a Zn-ribbon; Annotated by: sma3s; COG1545.
 
 
 0.873
AMG75608.1
Uncharacterized protein; Annotated by: sma3s; COG1545.
 
 
 0.820
AMG73983.1
Putative nucleic-acid-binding protein containing a Zn-ribbon; Annotated by: sma3s; COG1545.
 
 
 0.804
AMG73479.1
AMP-dependent synthetase and ligase; Annotated by: sma3s; COG0318.
 
  
 0.732
echA4
Enoyl-CoA hydratase; Annotated by: sma3s; COG1024; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.675
echA5
Enoyl-CoA hydratase; Annotated by: sma3s; COG1024; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.666
hbd
3-hydroxybutyryl-CoA dehydrogenase; Annotated by: sma3s; COG1250.
  
 0.646
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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