STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG73555.1Uncharacterized protein; Annotated by: sma3s. (61 aa)    
Predicted Functional Partners:
AMG73554.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Annotated by: sma3s; COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.858
yliI
Glucose dehydrogenase; Annotated by: sma3s; COG2133.
       0.442
AMG73552.1
Alpha/beta hydrolase fold protein; Annotated by: sma3s; COG1075.
       0.418
AMG73556.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Annotated by: sma3s; COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.408
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.