STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybgCThioesterase; Annotated by: sma3s; COG0824. (154 aa)    
Predicted Functional Partners:
exbB2
Biopolymer transport protein ExbB; Annotated by: sma3s; COG0811.
 
  
 0.927
tolR
Biopolymer transport protein ExbD/TolR; Annotated by: sma3s; COG0848.
 
  
 0.920
tolB
Protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.841
AMG73615.1
Putative TolA; Annotated by: sma3s; COG5373.
  
  
 0.807
ruvB
Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
     
 0.658
pal
Outer membrane lipoprotein Omp16-like protein; Annotated by: sma3s; COG2885.
     
 0.650
fabD
Malonyl CoA-acyl carrier protein transacylase; Annotated by: sma3s; COG0331.
  
 
 0.509
AMG72812.1
Putative acyl-carrier protein; Annotated by: sma3s; COG0331.
  
 
 0.507
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.438
exbB
MotA/TolQ/ExbB proton channel; Annotated by: sma3s; COG0811.
 
  
 0.433
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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