STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metN2Methionine import ATP-binding protein MetN; Annotated by: sma3s; COG1127. (288 aa)    
Predicted Functional Partners:
AMG73661.1
Mammalian cell entry related; Annotated by: sma3s; COG1463.
 
 0.999
AMG73663.1
ABC transporter permease; Annotated by: sma3s; COG0767.
 
 0.999
AMG73993.1
ABC-type transport system periplasmic component; Annotated by: sma3s; COG1463.
 
 0.996
linN
ABC transporter; Annotated by: sma3s; COG3218.
  
  
 0.908
rbbA
Multidrug ABC transporter ATP-binding protein; Annotated by: sma3s; COG1131; COG1121; COG0842.
    
0.835
pstS
Phosphate ABC transporter substrate-binding protein; Annotated by: sma3s; COG0226.
    
 0.626
AMG73664.1
HAD-superfamily subfamily IB, PSPase-like protein; Annotated by: sma3s; COG0560.
       0.624
lptB2
Lipopolysaccharide export system ATP-binding protein LptB; Annotated by: sma3s; COG1137.
 
 
 
0.554
lptB
Lipopolysaccharide export system ATP-binding protein LptB; Annotated by: sma3s; COG1137.
 
 
 
0.541
modB
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
 
    0.538
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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