STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG73683.1Glucose 1-dehydrogenase; Annotated by: sma3s; COG1028. (247 aa)    
Predicted Functional Partners:
nahD
DSBA oxidoreductase; Annotated by: sma3s; COG3917.
 
  
 0.860
AMG75694.1
Uncharacterized protein; Annotated by: sma3s.
 
  
 0.620
AMG74672.1
NADH oxidase; Annotated by: sma3s; COG0604.
 
  
 0.599
AMG73285.1
Antibiotic biosynthesis monooxygenase; Annotated by: sma3s; COG1359.
 
     0.563
AMG73684.1
HxlR family transcriptional regulator; Annotated by: sma3s; COG1733.
       0.562
AMG75843.1
DSBA oxidoreductase; Annotated by: sma3s; COG3917.
 
  
 0.529
fadH1.1
Short-chain dehydrogenase/reductase SDR; Annotated by: sma3s; COG1028.
 
 0.515
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.499
eryA
6-deoxyerythronolide B synthase II; Annotated by: sma3s; COG0604.
 
  
 0.495
fabG6
3-oxoacyl-ACP reductase; Annotated by: sma3s; COG1028.
 
 0.485
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.