STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG73753.1Extensin-like protein; Annotated by: sma3s; COG3921. (241 aa)    
Predicted Functional Partners:
cyp136
Cytochrome P450; Annotated by: sma3s; COG2124; Belongs to the cytochrome P450 family.
       0.688
AMG73902.1
Spore coat U domain-containing protein; Annotated by: sma3s; COG5430.
  
     0.489
sleB
Cell wall hydrolase SleB; Annotated by: sma3s; COG3773.
  
     0.477
sleB2
SleB-like protein; Annotated by: sma3s; COG3773.
  
     0.458
AMG75122.1
NUDIX hydrolase; Annotated by: sma3s.
       0.443
AMG75782.1
Putative salt-induced outer membrane protein; Annotated by: sma3s; COG3137.
  
     0.435
AMG73903.1
Putative type I pilus protein CsuB; Annotated by: sma3s; COG5430.
  
     0.432
ada
Methylated-DNA--protein-cysteine methyltransferase; Annotated by: sma3s; COG2169; COG0350.
     
 0.424
AMG73751.1
Uncharacterized protein; Annotated by: sma3s.
       0.415
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.