STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tesAAcyl-CoA thioesterase; Annotated by: sma3s; COG2755. (238 aa)    
Predicted Functional Partners:
AMG73775.1
Putative ABC transporter permease protein; Annotated by: sma3s; COG3127.
 
     0.913
AMG73418.1
Uncharacterized protein; Annotated by: sma3s.
  
 
 0.841
AMG73776.1
ABC transporter; Annotated by: sma3s; COG4181.
 
     0.804
AMG73792.1
Uncharacterized protein; Annotated by: sma3s.
     
 0.506
AMG75026.1
Short-chain dehydrogenase/reductase SDR; Annotated by: sma3s; COG4221; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.492
AMG75972.1
Peptidase M48, Ste24p; Annotated by: sma3s; COG4784.
  
     0.475
AMG75873.1
Siroheme synthase-like protein; Annotated by: sma3s; COG1648; COG0007.
     
 0.435
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.