STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG74039.1PepSY-associated TM helix domain-containing protein; Annotated by: sma3s; COG3295. (198 aa)    
Predicted Functional Partners:
AMG74040.1
Putative periplasmic protein; Annotated by: sma3s; COG3656.
   
 0.994
AMG74041.1
ABC transporter permease; Annotated by: sma3s; COG5266.
 
   
 0.964
apbE
Thiamine biosynthesis protein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
     0.896
AMG74044.1
PKHD-type hydroxylase; Annotated by: sma3s; COG3128.
 
   
 0.492
AMG76347.1
Putative TonB-dependent receptor; Annotated by: sma3s; COG4771.
 
   
 0.467
AMG73539.1
Uncharacterized protein; Annotated by: sma3s.
  
     0.454
AMG74962.1
TonB-dependent receptor; Annotated by: sma3s; COG1629.
  
     0.417
AMG73538.1
Uncharacterized protein; Annotated by: sma3s.
  
     0.414
katA
Catalase; Annotated by: sma3s; COG0753; Belongs to the catalase family.
       0.400
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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