STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMG74043.1TonB-like protein; Annotated by: sma3s; COG0810. (213 aa)    
Predicted Functional Partners:
exbB
MotA/TolQ/ExbB proton channel; Annotated by: sma3s; COG0811.
 
 
 0.778
exbD
Biopolymer transport protein ExbD/TolR; Annotated by: sma3s; COG0848.
 
 
 0.754
AMG74044.1
PKHD-type hydroxylase; Annotated by: sma3s; COG3128.
 
  
 0.727
exbD2
Biopolymer transporter ExbD; Annotated by: sma3s; COG0848.
 
 
 0.669
exbB2
Biopolymer transport protein ExbB; Annotated by: sma3s; COG0811.
  
 
 0.575
tolR
Biopolymer transport protein ExbD/TolR; Annotated by: sma3s; COG0848.
  
 
 0.571
AMG72793.1
TonB-dependent receptor; Annotated by: sma3s; COG1629.
 
 
 0.530
fiu
Catecholate siderophore receptor Fiu; Annotated by: sma3s; COG4774.
 
   
 0.527
AMG72792.1
TonB-dependent receptor; Annotated by: sma3s; COG1629.
 
 
 0.525
AMG73974.1
TonB-dependent receptor; Annotated by: sma3s; COG1629.
 
 
 0.522
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.