STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcrAResponse regulator receiver protein; Annotated by: sma3s; COG2204. (148 aa)    
Predicted Functional Partners:
AMG74149.1
Histidine kinase; Annotated by: sma3s; COG4251; COG5278.
 
 
 0.982
fsrR
Signal transduction histidine kinase; Annotated by: sma3s; COG3920; COG4567.
 
 
 0.960
cheA
Histidine kinase; Annotated by: sma3s; COG0643.
 
 
 0.943
fixL
Sensor protein FixL; Annotated by: sma3s; COG4191.
  
 
 0.842
fixL2
Sensor protein FixL; Annotated by: sma3s; COG4191.
  
 
 0.842
fixL3
Sensor protein FixL; Annotated by: sma3s; COG4191.
  
 
 0.842
AMG75302.1
CheW protein; Annotated by: sma3s; COG0835.
 
 
 0.687
AMG74599.1
Putative PAS/PAC sensor protein; Annotated by: sma3s; COG3852.
  
 
 0.660
cheB
Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 
 0.634
AMG73402.1
Periplasmic sensor hybrid histidine kinase; Annotated by: sma3s; COG4191; COG2204.
 
 
 0.630
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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