STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoDAlkaline phosphatase; Annotated by: sma3s; COG3540. (523 aa)    
Predicted Functional Partners:
folE
GTP cyclohydrolase 1; Annotated by: sma3s; COG0302.
    
 0.916
folE2
GTP cyclohydrolase 1; Annotated by: sma3s; COG0302.
    
 0.916
glpQ
Glycerophosphoryl diester phosphodiesterase; Annotated by: sma3s; COG0584.
 
  
 0.723
copB
Copper resistance protein B; Annotated by: sma3s; COG3667.
       0.544
copA4
Copper resistance protein A; Annotated by: sma3s; COG2132.
       0.544
grxC
Glutaredoxin; Annotated by: sma3s; COG0695.
       0.544
nadK
NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
     
  0.499
merR2
MerR family transcriptional regulator; Annotated by: sma3s; COG0789.
       0.415
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.