STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG74249.1Phage transcriptional regulator, AlpA; Annotated by: sma3s. (89 aa)    
Predicted Functional Partners:
AMG74247.1
Glycosidase; Annotated by: sma3s.
 
     0.947
traF3
Conjugal transfer protein TraF; Annotated by: sma3s; COG4959.
 
     0.946
repA3
RepA replication protein; Annotated by: sma3s; COG5534.
 
     0.921
virD23
Type VI secretion protein; Annotated by: sma3s; COG3843.
 
     0.891
AMG74245.1
Uncharacterized protein; Annotated by: sma3s; COG5489.
 
     0.888
AMG74250.1
Uncharacterized protein; Annotated by: sma3s.
 
     0.848
AMG72450.1
Glycosidase; Annotated by: sma3s.
 
     0.779
AMG72585.1
Glycosidase; Annotated by: sma3s.
 
     0.779
AMG75531.1
Glycosidase; Annotated by: sma3s.
 
     0.779
AMG76553.1
Glycosidase; Annotated by: sma3s.
 
     0.778
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.