STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMG74285.1FAD-dependent oxidoreductase; Annotated by: sma3s; COG0665. (359 aa)    
Predicted Functional Partners:
AMG75037.1
FAD-dependent oxidoreductase; Annotated by: sma3s; COG0665.
  
  
 
0.918
dauA
FAD-dependent oxidoreductase; Annotated by: sma3s; COG0665.
  
  
 
0.917
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
  
 0.618
AMG74286.1
UPF0339 protein; Annotated by: sma3s; COG3422.
       0.569
cpaA
Peptidase A24A, prepilin type IV; Annotated by: sma3s; COG4960.
       0.547
cpaD
Pilus assembly protein CpaD; Annotated by: sma3s; COG5461.
 
     0.510
AMG75321.1
Uncharacterized protein; Annotated by: sma3s.
 
    0.507
AMG73404.1
Phosphopantetheine-binding protein; Annotated by: sma3s; COG0236.
  
   
 0.506
cpaE
Flp pilus assembly protein ATPase CpaE; Annotated by: sma3s; COG4963.
 
     0.503
cpaC
Secretion system protein; Annotated by: sma3s; COG4964; Belongs to the bacterial secretin family.
       0.463
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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