STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hadh3-hydroxy-2-methylbutyryl-CoA dehydrogenase; Annotated by: sma3s; COG1028. (260 aa)    
Predicted Functional Partners:
fadA4
Acetyl-CoA acetyltransferase; Annotated by: sma3s; COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.863
AMG74407.1
Acyl-CoA dehydrogenase-like protein; Annotated by: sma3s; COG1960.
  
  0.823
AMG74408.1
Acyl-CoA dehydrogenase-like protein; Annotated by: sma3s; COG1960.
  
  0.823
AMG74402.1
Protein tyrosine/serine phosphatase; Annotated by: sma3s; COG2365.
   
  0.625
mcr2
Carnitine dehydratase; Annotated by: sma3s; COG1804; Belongs to the CoA-transferase III family.
 
 
 
 0.616
crt
Crotonase; Annotated by: sma3s; COG1024; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.614
AMG76466.1
Arylsulfatase A family protein; Annotated by: sma3s.
  
 0.609
fadA
3-ketoacyl-CoA thiolase; Annotated by: sma3s; COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.581
fadA2
Acetyl-CoA acyltransferase; Annotated by: sma3s; COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.581
pcaF
Acetyl-CoA acetyltransferase; Annotated by: sma3s; COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.581
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.