STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG74561.1Glycosyl transferase, group 1; Annotated by: sma3s. (336 aa)    
Predicted Functional Partners:
AMG73291.1
Polymerase; Annotated by: sma3s; COG3307.
 
  
 0.828
AMG74560.1
Histidine kinase A-like protein; Annotated by: sma3s; COG0642.
 
   
 0.818
AMG75017.1
Glycosyl transferase, group 1; Annotated by: sma3s; COG0438.
     0.791
lthA
Sugar transferase; Annotated by: sma3s; COG2148.
 
  
 0.783
AMG75080.1
Lipopolysaccharide biosynthesis; Annotated by: sma3s; COG3206.
 
  
 0.783
AMG75073.1
ABC transporter; Annotated by: sma3s.
 
   
 0.771
wza
Polysaccharide export protein; Annotated by: sma3s; COG1596.
 
  
 0.760
AMG75075.1
FemAB-related protein, PEP-CTERM system-associated; Annotated by: sma3s; COG3146.
  
    0.754
AMG73418.1
Uncharacterized protein; Annotated by: sma3s.
 
   
 0.740
AMG75086.1
Uncharacterized protein; Annotated by: sma3s.
 
 
 0.736
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.