STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG74594.1Iron dicitrate transport regulator FecR; Annotated by: sma3s; COG3712. (307 aa)    
Predicted Functional Partners:
AMG74593.1
RNA polymerase sigma-70 factor; Annotated by: sma3s; COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.977
AMG74595.1
TonB-dependent receptor; Annotated by: sma3s; COG1629.
 
  
 0.959
AMG73487.1
RNA polymerase sigma-24 factor; Annotated by: sma3s; COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.842
AMG72407.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Annotated by: sma3s; COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.841
AMG72500.1
ECF subfamily RNA polymerase sigma-24 factor; Annotated by: sma3s; COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.841
AMG74608.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Annotated by: sma3s; COG1595.
 
 
 0.841
AMG74926.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Annotated by: sma3s; COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.841
AMG75565.1
Putative RNA polymerase sigma-70 factor; Annotated by: sma3s; COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.841
AMG76151.1
ECF subfamily RNA polymerase sigma-24 factor; Annotated by: sma3s; COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.841
AMG76217.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Annotated by: sma3s; COG1595; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.840
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.