STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG74686.1Phospholipase D/transphosphatidylase; Annotated by: sma3s; COG1502. (497 aa)    
Predicted Functional Partners:
AMG76367.1
Endonuclease/exonuclease/phosphatase; Annotated by: sma3s; COG3568.
 
  
 0.678
acd2
Acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
       0.655
AMG74688.1
MerR family transcriptional regulator; Annotated by: sma3s; COG0789.
       0.526
AMG75979.1
Fe-S cluster formation protein; Annotated by: sma3s; COG0822.
   
 
 0.500
AMG75289.1
Response regulator receiver protein; Annotated by: sma3s; COG2204.
 
   
 0.478
ispDF
Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).
     
 0.445
hisI
Phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.
       0.418
plsC2
Phospholipid/glycerol acyltransferase; Annotated by: sma3s; COG0204.
 
 
 0.414
AMG73290.1
DNA topoisomerase; Annotated by: sma3s; COG3569.
  
    0.406
AMG74689.1
Uncharacterized protein; Annotated by: sma3s.
       0.401
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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