STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exeASecretion ATPase, PEP-CTERM locus subfamily; Annotated by: sma3s; COG3267. (381 aa)    
Predicted Functional Partners:
ywqD
Protein-tyrosine kinase; Annotated by: sma3s; COG0489.
 
     0.956
AMG75080.1
Lipopolysaccharide biosynthesis; Annotated by: sma3s; COG3206.
 
     0.956
nodB
Polysaccharide deacetylase; Annotated by: sma3s; COG0726.
 
     0.948
AMG75073.1
ABC transporter; Annotated by: sma3s.
 
    0.942
AMG75074.1
Group 1 glycosyl transferase; Annotated by: sma3s; COG0438.
 
    0.939
wza
Polysaccharide export protein; Annotated by: sma3s; COG1596.
 
     0.937
AMG75075.1
FemAB-related protein, PEP-CTERM system-associated; Annotated by: sma3s; COG3146.
 
     0.931
AMG75078.1
Glycine-rich cell wall structural protein; Annotated by: sma3s.
       0.829
asnB2
Asparagine synthase; Annotated by: sma3s; COG0367.
 
     0.818
btrK
Diaminopimelate decarboxylase; Annotated by: sma3s; COG0019.
 
     0.772
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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