STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmtAPhospholipid methyltransferase; Annotated by: sma3s; COG2226. (208 aa)    
Predicted Functional Partners:
trxB
Thioredoxin reductase; Annotated by: sma3s; COG0492.
  
  
 0.584
ubiG
2-polyprenyl-6-hydroxyphenol methylase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
 
 0.549
AMG75879.1
Alpha/beta hydrolase; Annotated by: sma3s; COG0596.
 
   
 0.542
AMG75099.1
Alpha/beta hydrolase; Annotated by: sma3s; COG0596.
 
   
 0.470
AMG73988.1
Hydrolase, putative; Annotated by: sma3s; COG0596.
 
  
 0.438
p450
Cytochrome P450; Annotated by: sma3s; COG2124; Belongs to the cytochrome P450 family.
  
 
 
 0.434
AMG76295.1
Lvivd repeat-containing protein; Annotated by: sma3s; COG5276.
  
     0.432
ahpG3
Cytochrome P450; Annotated by: sma3s; COG2124; Belongs to the cytochrome P450 family.
  
 
 
 0.430
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.429
AMG76296.1
Uncharacterized protein; Annotated by: sma3s.
  
     0.428
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.