Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMG74153.1 | AMG75091.1 | SGRAN_1775 | SGRAN_2742 | Uncharacterized protein; Annotated by: sma3s. | Putative amidotransferase; Annotated by: sma3s; COG4977. | 0.417 |
AMG74443.1 | AMG75091.1 | SGRAN_2068 | SGRAN_2742 | Transcriptional regulator, AraC family; Annotated by: sma3s; COG2207. | Putative amidotransferase; Annotated by: sma3s; COG4977. | 0.505 |
AMG75090.1 | AMG75091.1 | SGRAN_2741 | SGRAN_2742 | UPF0176 protein; Annotated by: sma3s; COG1054; Belongs to the UPF0176 family. | Putative amidotransferase; Annotated by: sma3s; COG4977. | 0.648 |
AMG75090.1 | glcB | SGRAN_2741 | SGRAN_2743 | UPF0176 protein; Annotated by: sma3s; COG1054; Belongs to the UPF0176 family. | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.496 |
AMG75091.1 | AMG74153.1 | SGRAN_2742 | SGRAN_1775 | Putative amidotransferase; Annotated by: sma3s; COG4977. | Uncharacterized protein; Annotated by: sma3s. | 0.417 |
AMG75091.1 | AMG74443.1 | SGRAN_2742 | SGRAN_2068 | Putative amidotransferase; Annotated by: sma3s; COG4977. | Transcriptional regulator, AraC family; Annotated by: sma3s; COG2207. | 0.505 |
AMG75091.1 | AMG75090.1 | SGRAN_2742 | SGRAN_2741 | Putative amidotransferase; Annotated by: sma3s; COG4977. | UPF0176 protein; Annotated by: sma3s; COG1054; Belongs to the UPF0176 family. | 0.648 |
AMG75091.1 | glcB | SGRAN_2742 | SGRAN_2743 | Putative amidotransferase; Annotated by: sma3s; COG4977. | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.543 |
AMG75091.1 | lexA | SGRAN_2742 | SGRAN_1944 | Putative amidotransferase; Annotated by: sma3s; COG4977. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.449 |
glcB | AMG75090.1 | SGRAN_2743 | SGRAN_2741 | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | UPF0176 protein; Annotated by: sma3s; COG1054; Belongs to the UPF0176 family. | 0.496 |
glcB | AMG75091.1 | SGRAN_2743 | SGRAN_2742 | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | Putative amidotransferase; Annotated by: sma3s; COG4977. | 0.543 |
lexA | AMG75091.1 | SGRAN_1944 | SGRAN_2742 | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | Putative amidotransferase; Annotated by: sma3s; COG4977. | 0.449 |