STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thnNGlutaryl-CoA dehydrogenase-like protein; Annotated by: sma3s; COG1960. (394 aa)    
Predicted Functional Partners:
sucB
2-oxoglutarate dehydrogenase complex component E2; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
   
 0.915
lpd
Dihydrolipoamide dehydrogenase; Annotated by: sma3s; COG1249.
  
 
 0.908
lpd2
Dihydrolipoamide dehydrogenase; Annotated by: sma3s; COG1249.
  
 
 0.908
gcdH
Glutaryl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
  
  
 
0.901
thnP
Electron transfer flavoprotein alpha subunit-like protein; Annotated by: sma3s; COG2025.
 
 
 0.851
thnO
Electron transfer flavoprotein beta subunit-like protein; Annotated by: sma3s; COG2086.
  
 
 0.851
crt
Crotonase; Annotated by: sma3s; COG1024; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.847
AMG72864.1
Enoyl-CoA hydratase; Annotated by: sma3s; COG1024.
  
 0.827
AMG73433.1
Enoyl-CoA hydratase; Annotated by: sma3s; COG1024.
  
 0.827
AMG73459.1
enoyl-CoA hydratase; Annotated by: manual blastp; COG1024.
  
 0.827
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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