ssb protein (Sphingopyxis granuli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ssb

Single-stranded DNA-binding protein; Annotated by: sma3s; COG0629. (129 aa)

Predicted Functional Partners:

ssb2

0.920

holC

0.888

priA

0.881

holB

0.872

dnaX

0.853

dnaE

0.845

dnaE2

0.823

dnaE2.1

0.823

rnhA

0.790

rpsF

0.782

Your Current Organism:

Sphingopyxis granuli

NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dnaE	dnaX	SGRAN_1959	SGRAN_2430	DNA polymerase III subunit alpha; Annotated by: sma3s; COG0587.	DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.989
dnaE	holB	SGRAN_1959	SGRAN_2217	DNA polymerase III subunit alpha; Annotated by: sma3s; COG0587.	DNA polymerase III subunit delta; Annotated by: sma3s; COG0470.	0.988
dnaE	holC	SGRAN_1959	SGRAN_2980	DNA polymerase III subunit alpha; Annotated by: sma3s; COG0587.	DNA polymerase III subunit chi; Annotated by: sma3s; COG2927.	0.987
dnaE	ssb	SGRAN_1959	SGRAN_2882	DNA polymerase III subunit alpha; Annotated by: sma3s; COG0587.	Single-stranded DNA-binding protein; Annotated by: sma3s; COG0629.	0.845
dnaE	ssb2	SGRAN_1959	SGRAN_0368	DNA polymerase III subunit alpha; Annotated by: sma3s; COG0587.	Single-stranded DNA-binding protein; Annotated by: sma3s; COG0629.	0.823
dnaE2	dnaX	SGRAN_3199	SGRAN_2430	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.882
dnaE2	holB	SGRAN_3199	SGRAN_2217	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	DNA polymerase III subunit delta; Annotated by: sma3s; COG0470.	0.882
dnaE2	holC	SGRAN_3199	SGRAN_2980	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	DNA polymerase III subunit chi; Annotated by: sma3s; COG2927.	0.879
dnaE2	ssb	SGRAN_3199	SGRAN_2882	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	Single-stranded DNA-binding protein; Annotated by: sma3s; COG0629.	0.823
dnaE2	ssb2	SGRAN_3199	SGRAN_0368	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	Single-stranded DNA-binding protein; Annotated by: sma3s; COG0629.	0.823
dnaE2.1	dnaX	SGRAN_4087	SGRAN_2430	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.880
dnaE2.1	holB	SGRAN_4087	SGRAN_2217	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	DNA polymerase III subunit delta; Annotated by: sma3s; COG0470.	0.886
dnaE2.1	holC	SGRAN_4087	SGRAN_2980	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	DNA polymerase III subunit chi; Annotated by: sma3s; COG2927.	0.879
dnaE2.1	ssb	SGRAN_4087	SGRAN_2882	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	Single-stranded DNA-binding protein; Annotated by: sma3s; COG0629.	0.823
dnaE2.1	ssb2	SGRAN_4087	SGRAN_0368	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	Single-stranded DNA-binding protein; Annotated by: sma3s; COG0629.	0.823
dnaX	dnaE	SGRAN_2430	SGRAN_1959	DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	DNA polymerase III subunit alpha; Annotated by: sma3s; COG0587.	0.989
dnaX	dnaE2	SGRAN_2430	SGRAN_3199	DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	0.882
dnaX	dnaE2.1	SGRAN_2430	SGRAN_4087	DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	0.880
dnaX	holB	SGRAN_2430	SGRAN_2217	DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	DNA polymerase III subunit delta; Annotated by: sma3s; COG0470.	0.938
dnaX	holC	SGRAN_2430	SGRAN_2980	DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	DNA polymerase III subunit chi; Annotated by: sma3s; COG2927.	0.990