STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
fabG103-hydroxyacyl-CoA dehydrogenase; Annotated by: sma3s; COG1028; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (305 aa)    
Predicted Functional Partners:
acd12
Acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
 
  0.837
AMG75351.1
3-methylfumaryl-CoA hydratase; Annotated by: sma3s; COG3777.
 
   
 0.807
rhlG
Short-chain dehydrogenase/reductase SDR; Annotated by: sma3s; COG1028.
  
     0.697
AMG72834.1
Short-chain dehydrogenase; Annotated by: sma3s; COG0300; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.660
AMG75859.1
3-oxoacyl-[acyl-carrier protein] reductase; Annotated by: sma3s; COG1028.
  
     0.625
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
 
 
 0.546
AMG73806.1
Putative acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
 
  0.526
AMG75349.1
Uncharacterized protein; Annotated by: manual blastp; COG5650.
     
 0.525
AMG73807.1
Acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
 
  0.515
AMG73429.1
3-oxoacyl-[acyl-carrier protein] reductase; Annotated by: manual blastp; COG1028.
  
     0.513
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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