STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mucR4Nodulation competitiveness determinant; Annotated by: sma3s; COG4957. (143 aa)    
Predicted Functional Partners:
AMG76488.1
Uncharacterized protein; Annotated by: sma3s; COG1434.
  
     0.584
AMG76026.1
Uncharacterized protein; Annotated by: sma3s; COG3814.
  
     0.568
AMG75469.1
GCN5-related N-acetyltransferase; Annotated by: sma3s; COG0456.
       0.546
yeaZ
Peptidase M22; Annotated by: sma3s; COG1214.
       0.546
fur
Ferric uptake regulation protein; Annotated by: sma3s; COG0735; Belongs to the Fur family.
       0.530
AMG75466.1
Phospholipid/glycerol acyltransferase; Annotated by: sma3s; COG0204.
       0.529
arsR2
ArsR family transcriptional regulator; Annotated by: sma3s; COG2226; COG0640.
  
   
 0.528
AMG75471.1
Putative NADH dehydrogenase/NAD(P)H nitroreductase; Annotated by: sma3s; COG0778.
       0.527
miaB
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.526
AMG73626.1
Uncharacterized protein; Annotated by: sma3s; COG3750.
  
     0.524
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.