STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMG75548.12OG-Fe(II) oxygenase; Annotated by: sma3s; COG3145. (196 aa)    
Predicted Functional Partners:
AMG75547.1
Uncharacterized protein; Annotated by: sma3s; COG2135.
       0.778
ada
Methylated-DNA--protein-cysteine methyltransferase; Annotated by: sma3s; COG2169; COG0350.
  
  
 0.694
AMG75549.1
Endonuclease/exonuclease/phosphatase; Annotated by: sma3s; COG3568.
       0.587
AMG75545.1
Calpastatin; Annotated by: sma3s; COG5579.
       0.559
AMG75546.1
Uncharacterized protein; Annotated by: sma3s; COG2135; Belongs to the SOS response-associated peptidase family.
       0.559
AMG72797.1
Activator of HSP90 ATPase 1 family protein; Annotated by: sma3s.
  
     0.543
AMG76211.1
Uncharacterized protein; Annotated by: sma3s.
  
     0.541
AMG76004.1
Uncharacterized protein; Annotated by: sma3s; COG3798.
 
     0.539
AMG76160.1
Uncharacterized protein; Annotated by: sma3s; COG5010.
  
     0.532
AMG72527.1
Heavy metal resistance protein; Annotated by: sma3s.
  
   
 0.525
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.