STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMG75549.1Endonuclease/exonuclease/phosphatase; Annotated by: sma3s; COG3568. (302 aa)    
Predicted Functional Partners:
sufS
Putative cysteine desulfurase; Annotated by: sma3s; COG0520.
   
   0.669
AMG75759.1
Class V aminotransferase; Annotated by: sma3s; COG3844.
   
   0.669
AMG75547.1
Uncharacterized protein; Annotated by: sma3s; COG2135.
       0.592
AMG75548.1
2OG-Fe(II) oxygenase; Annotated by: sma3s; COG3145.
       0.587
AMG73027.1
Putative TonB-dependent receptor; Annotated by: sma3s; COG1629.
  
     0.486
AMG76118.1
Glutathione peroxidase; Annotated by: sma3s.
  
     0.455
AMG75546.1
Uncharacterized protein; Annotated by: sma3s; COG2135; Belongs to the SOS response-associated peptidase family.
       0.444
AMG75545.1
Calpastatin; Annotated by: sma3s; COG5579.
       0.433
AMG73276.1
OmpA/MotB; Annotated by: sma3s; COG2885.
  
  
 0.429
cls2
Cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
 
  
 0.401
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.