STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG75592.1TonB-dependent receptor; Annotated by: sma3s; COG1629. (786 aa)    
Predicted Functional Partners:
AMG75941.1
Iron complex outermembrane recepter protein; Annotated by: sma3s; COG4206.
  
 
 0.733
AMG73489.1
TonB dependent receptor; Annotated by: manual blastp; COG4206.
  
  
 0.660
AMG76336.1
TonB-dependent Receptor Plug domain protein; Annotated by: sma3s; COG4206; COG1629.
  
  
 0.657
AMG75586.1
Uncharacterized protein; Annotated by: sma3s; COG3631.
 
     0.639
AMG75567.1
TonB-dependent receptor; Annotated by: sma3s; COG4206.
  
 
 0.633
AMG72498.1
TonB-dependent receptor; Annotated by: sma3s; COG4771.
  
 
 0.609
AMG75589.1
Crotonase; Annotated by: sma3s; COG1024; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.581
AMG75590.1
Crotonase; Annotated by: sma3s; COG1024; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.581
AMG75591.1
Uncharacterized protein; Annotated by: sma3s.
       0.581
AMG74009.1
TonB-dependent receptor; Annotated by: sma3s; COG1629.
  
 
 0.576
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.