STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gudP3MFS transporter; Annotated by: sma3s; COG2271. (538 aa)    
Predicted Functional Partners:
AMG75620.1
Butanediol dehydrogenase; Annotated by: sma3s; COG1063.
  
  
 0.785
AMG75619.1
Acyl-CoA ligase; Annotated by: sma3s; COG0318.
  
  
 0.782
AMG75618.1
Thioesterase superfamily protein; Annotated by: sma3s; COG0824.
       0.779
AMG75616.1
TonB-dependent receptor; Annotated by: sma3s; COG1629.
     
 0.523
AMG73856.1
Major facilitator transporter; Annotated by: sma3s; COG2271.
 
  
 0.469
AMG72861.1
Transcriptional regulator, putative; Annotated by: sma3s; COG1414.
 
  
 0.440
thnF
2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase; Annotated by: sma3s; COG3836; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.419
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.