STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG75701.1Beta-lactamase; Annotated by: sma3s; COG1680. (418 aa)    
Predicted Functional Partners:
scoA
Succinyl-CoA:3-ketoacid coenzyme A transferase subunit A; Annotated by: sma3s; COG1788.
       0.781
AMG75699.1
5'-nucleotidase; Annotated by: sma3s; COG2503.
       0.781
scoB
Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B; Annotated by: sma3s; COG2057.
       0.781
estB
Beta-lactamase; Annotated by: sma3s; COG1680.
  
     0.573
AMG75697.1
LysR family transcriptional regulator; Annotated by: sma3s; COG0583; Belongs to the LysR transcriptional regulatory family.
     
 0.568
AMG76084.1
Uncharacterized protein; Annotated by: sma3s.
  
     0.494
AMG75920.1
Putative outer membrane protein with a TonB box; Annotated by: sma3s; COG4771.
  
     0.463
AMG75696.1
Universal stress protein UspA; Annotated by: sma3s; COG0589.
  
    0.440
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.