STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG75835.1MarR family transcriptional regulator; Annotated by: sma3s; COG1846. (330 aa)    
Predicted Functional Partners:
AMG72640.1
O-antigen and teichoic acid-like export protein; Annotated by: sma3s; COG2244.
 
    0.767
AMG75067.1
Ribonuclease; Annotated by: sma3s; COG1530.
  
    0.764
AMG75975.1
Uncharacterized protein; Annotated by: sma3s.
  
     0.758
AMG75333.1
Tetratricopeptide; Annotated by: sma3s.
  
     0.748
AMG75016.1
XRE family transcriptional regulator; Annotated by: sma3s.
  
 
 0.739
AMG76292.1
Uncharacterized protein; Annotated by: sma3s; COG5375.
  
     0.739
AMG73404.1
Phosphopantetheine-binding protein; Annotated by: sma3s; COG0236.
 
  
 0.738
AMG74556.1
Uncharacterized protein; Annotated by: sma3s.
  
     0.733
AMG74308.1
Signal transduction protein; Annotated by: sma3s.
  
     0.728
linN
ABC transporter; Annotated by: sma3s; COG3218.
  
     0.717
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.