STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG75842.1Enoyl-CoA hydratase/isomerase; Annotated by: sma3s; COG1024. (267 aa)    
Predicted Functional Partners:
AMG75843.1
DSBA oxidoreductase; Annotated by: sma3s; COG3917.
 
     0.796
fadD4
Acyl-CoA synthetase; Annotated by: sma3s; COG0318.
  
 
 0.789
AMG73402.1
Periplasmic sensor hybrid histidine kinase; Annotated by: sma3s; COG4191; COG2204.
  
 
 0.786
AMG75844.1
TetR family transcriptional regulator; Annotated by: sma3s; COG1309.
  
    0.696
AMG74863.1
Acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
 
 0.621
fadA
3-ketoacyl-CoA thiolase; Annotated by: sma3s; COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.611
fadA2
Acetyl-CoA acyltransferase; Annotated by: sma3s; COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.611
pcaF
Acetyl-CoA acetyltransferase; Annotated by: sma3s; COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.611
tioL
Lipid-transfer protein; Annotated by: sma3s; COG0183; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.611
ltp2
Lipid-transfer protein; Annotated by: sma3s; COG0183.
  
 0.611
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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