STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG75896.1Binding-protein-dependent transport system inner membrane protein; Annotated by: sma3s; COG0600. (251 aa)    
Predicted Functional Partners:
AMG75898.1
ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit; Annotated by: sma3s; COG0715.
 
 
 0.999
AMG75895.1
ABC transporter related; Annotated by: sma3s; COG1116.
 
 0.997
aapM
Amino acid ABC transporter permease; Annotated by: sma3s; COG4597; COG0765.
 
 
 0.861
rbbA
Multidrug ABC transporter ATP-binding protein; Annotated by: sma3s; COG1131; COG1121; COG0842.
  
 
 0.829
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  0.823
AMG75894.1
Alpha/beta hydrolase fold protein; Annotated by: sma3s; COG0596.
 
     0.822
aapJ
Amino acid ABC transporter substrate-binding protein; Annotated by: sma3s; COG0834.
 
  
 0.814
AMG75897.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Annotated by: sma3s; COG2514.
 
    0.811
metN
Methionine import ATP-binding protein MetN; Annotated by: sma3s; COG1126.
 
 0.808
nbaC
3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate.
  
  
 0.798
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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