STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG75922.1Uncharacterized protein; Annotated by: sma3s. (84 aa)    
Predicted Functional Partners:
AMG75924.1
Uncharacterized protein; Annotated by: sma3s.
       0.749
AMG75925.1
Uncharacterized protein; Annotated by: sma3s.
       0.746
sufE
Fe-S metabolism protein SufE; Annotated by: sma3s; COG2166.
       0.736
AMG75923.1
Uncharacterized protein; Annotated by: sma3s.
       0.723
pspC
Phage-shock protein; Annotated by: sma3s; COG1983.
       0.708
pspB
Phage-shock protein; Annotated by: sma3s.
       0.708
pspA
Phage shock protein A; Annotated by: sma3s; COG1842.
       0.702
AMG75926.1
Uncharacterized protein; Annotated by: sma3s.
       0.678
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.