STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG76337.1Secretory lipase; Annotated by: sma3s; COG1506. (392 aa)    
Predicted Functional Partners:
AMG76336.1
TonB-dependent Receptor Plug domain protein; Annotated by: sma3s; COG4206; COG1629.
       0.701
AMG72973.1
Aminoglycoside phosphotransferase; Annotated by: sma3s; COG2187; COG0645.
  
  
 0.499
rdh
Short chain dehydrogenase; Annotated by: sma3s; COG1028.
  
   0.484
yqjI
PadR family transcriptional regulator; Annotated by: sma3s; COG1695.
 
     0.440
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.