STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprM2RND efflux system, outer membrane lipoprotein, NodT family; Annotated by: sma3s; COG1538. (467 aa)    
Predicted Functional Partners:
mexB
Multidrug transporter; Annotated by: sma3s; COG0841.
 0.994
acrA
Annotated by: sma3s; COG0845; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.969
oprM3
RND efflux system, outer membrane lipoprotein, NodT family; Annotated by: sma3s; COG1538.
  
  
 
0.924
oprM
RND efflux system, outer membrane lipoprotein, NodT family; Annotated by: sma3s; COG1538.
  
  
 
0.916
mexP
Multidrug RND transporter, membrane fusion protein MexP; Annotated by: sma3s; COG0845; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.819
bepE
Hydrophobe/amphiphile efflux-1 (HAE1) family protein; Annotated by: sma3s; COG0841.
 0.819
mexF2
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Annotated by: sma3s; COG0841.
 0.797
mexE
Efflux transporter, RND family, MFP subunit; Annotated by: sma3s; COG0845; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.793
AMG73276.1
OmpA/MotB; Annotated by: sma3s; COG2885.
 
 0.709
emrA2
Annotated by: sma3s; COG1566.
 
 0.696
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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