STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG76451.1Lytic transglycosylase, catalytic; Annotated by: sma3s. (273 aa)    
Predicted Functional Partners:
fliA
RNA polymerase sigma70; Annotated by: sma3s; COG1191; Belongs to the sigma-70 factor family.
     
 0.874
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
       0.868
AMG76163.1
Uncharacterized protein; Annotated by: sma3s; COG3827.
  
     0.620
AMG76449.1
Putative anti-sigma-28 factor, FlgM; Annotated by: sma3s; COG2747.
     
 0.595
motB
Flagellar motor protein MotB; Annotated by: sma3s; COG1360.
 
  
 0.579
AMG76450.1
Uncharacterized protein; Annotated by: sma3s.
       0.567
AMG75810.1
Histidine kinase; Annotated by: sma3s; COG2205.
  
  
 0.533
AMG75369.1
Uncharacterized protein; Annotated by: sma3s; COG5349.
 
     0.515
clpB2
Chaperone protein ClpB; Annotated by: sma3s; COG0542; Belongs to the ClpA/ClpB family.
  
  
 0.490
clpB
Chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE.
  
  
 0.490
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.