STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG76488.1Uncharacterized protein; Annotated by: sma3s; COG1434. (176 aa)    
Predicted Functional Partners:
ftsX
Cell division protein; Annotated by: sma3s; COG2177.
 
     0.907
plsC2
Phospholipid/glycerol acyltransferase; Annotated by: sma3s; COG0204.
 
     0.896
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
     0.883
AMG76491.1
Zinc finger/thioredoxin putative; Annotated by: sma3s; COG5373.
 
     0.754
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
    0.723
AMG72723.1
CBP3 protein; Annotated by: sma3s; COG5452.
  
     0.635
thrB
Homoserine kinase; Annotated by: sma3s; COG2334; Belongs to the pseudomonas-type ThrB family.
 
    0.608
AMG75810.1
Histidine kinase; Annotated by: sma3s; COG2205.
 
     0.604
AMG76026.1
Uncharacterized protein; Annotated by: sma3s; COG3814.
  
     0.599
mucR2
Nodulation competitiveness determinant; Annotated by: sma3s; COG4957.
  
     0.591
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.