STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG76555.1Uncharacterized protein; Annotated by: sma3s; COG5489. (111 aa)    
Predicted Functional Partners:
AMG76549.1
Transcriptional regulator; Annotated by: sma3s.
 
     0.888
AMG76553.1
Glycosidase; Annotated by: sma3s.
 
     0.881
traF6
Conjugal transfer protein TraF; Annotated by: sma3s; COG4959.
 
     0.875
AMG74253.1
Uncharacterized protein y4eB; Annotated by: sma3s; COG5489.
  
     0.769
AMG76546.1
Uncharacterized protein; Annotated by: sma3s.
 
     0.767
slt4
Lytic transglycosylase; Annotated by: sma3s; COG0741.
 
     0.754
AMG74249.1
Phage transcriptional regulator, AlpA; Annotated by: sma3s.
 
     0.752
repA4
RepA replication protein; Annotated by: sma3s; COG5534.
 
     0.752
traF1
Putative conjugal transfer protein TraF; Annotated by: sma3s; COG4959.
 
     0.746
traF3
Conjugal transfer protein TraF; Annotated by: sma3s; COG4959.
 
     0.729
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.