STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMP0038Conserved hypothetical protein. (298 aa)    
Predicted Functional Partners:
MMP0039
Conserved hypothetical protein.
  
  
 0.998
MMP0040
Type II secretion system protein; putative; subunit 1.
 
  
 0.992
flaI
Flagella accessory protein I; Citation: J. Bac. 183: 7154-7164.
 
  
 0.806
tfb
Transcription initiation factor B; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
  
    0.801
MMP0042
Conserved hypothetical protein.
  
    0.757
MMP0234
Conserved hypothetical protein.
     
 0.721
MMP0241
Conserved hypothetical archaeal protein.
  
  
 0.695
MMP0033
LysR family member; Contains a helix-turn-helix domain; Citation: Mol. Cell (2000) 6: 637-648. Nuc. Acids Res. (1999) 27: 4658-4670.
 
   
 0.692
MMP0235
Conserved hypothetical protein.
   
  
 0.673
MMP0124
Conserved hypothetical protein.
  
  
 0.672
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.