Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0039Conserved hypothetical protein. (352 aa)    
Predicted Functional Partners:
MMP0038
Conserved hypothetical protein.
  
  
 0.998
MMP0040
Type II secretion system protein; putative; subunit 1.
  
  
 0.991
flaI
Flagella accessory protein I; Citation: J. Bac. 183: 7154-7164.
  
  
 0.832
tfb
Transcription initiation factor B; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
  
    0.810
MMP0234
Conserved hypothetical protein.
  
  
 0.804
MMP0042
Conserved hypothetical protein.
  
    0.767
MMP0235
Conserved hypothetical protein.
   
  
 0.676
MMP0241
Conserved hypothetical archaeal protein.
  
  
 0.675
MMP0124
Conserved hypothetical protein.
  
  
 0.672
MMP0239
Conserved hypothetical archaeal protein.
   
  
 0.664
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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