STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMP0040Type II secretion system protein; putative; subunit 1. (549 aa)    
Predicted Functional Partners:
MMP0038
Conserved hypothetical protein.
 
  
 0.992
MMP0039
Conserved hypothetical protein.
  
  
 0.992
tfb
Transcription initiation factor B; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
  
  
 0.899
MMP0234
Conserved hypothetical protein.
  
  
 0.798
MMP0042
Conserved hypothetical protein.
  
    0.786
MMP0241
Conserved hypothetical archaeal protein.
  
  
 0.681
MMP0235
Conserved hypothetical protein.
   
  
 0.679
MMP1685
Conserved hypothetical protein.
   
  
 0.666
MMP0231
Conserved hypothetical protein.
   
  
 0.661
MMP0124
Conserved hypothetical protein.
     
 0.658
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.