Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0047Conserved hypothetical protein. (369 aa)    
Predicted Functional Partners:
MMP1648
Conserved hypothetical protein.
 
  
 0.761
MMP0902
Protein of unknown function DUF126; Belongs to the UPF0107 family.
       0.688
MMP1663
Conserved hypothetical protein.
       0.672
gltX
Glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
     
 0.644
dnaG
Possible DnaG-type primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.633
MMP1288
Unnamed protein product.
       0.633
MMP0048
Conserved hypothetical protein.
       0.572
cmd
Carboxymuconolactone decarboxylase:Alkylhydroperoxidase AhpD core domain.
 
  
 0.539
MMP0589
Conserved hypothetical protein.
 
    0.523
MMP0049
Carbonic anhydrase (gamma family Zn(II)-dependent enzymes).
       0.490
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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