Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MMP0053Protein of unknown function DUF34. (246 aa)    
Predicted Functional Partners:
MMP0054
Conserved hypothetical protein.
  
    0.963
MMP0055
Conserved hypothetical Archael protein.
  
   0.796
MMP1498
Conserved hypothetical protein.
       0.648
hsp20
Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.639
MMP0096
Aminotransferase (subgroup I); Ward DE, de Vos WM, van der Oost J (2002) Archaea 1:133-141; Citation: Andreotti G, Cubellis MV, Nitti G, Sannia G, Mai X, Adams MW, Marino G. (1995). Biochim Biophys Acta 1247:90-6.
 
    0.635
MMP0935
Conserved hypothetical protein; Belongs to the UPF0254 family.
       0.629
MMP1497
Conserved hypothetical protein.
       0.622
MMP1243
Conserved hypothetical archaeal protein.
       0.618
hat
Histone acetyltransferase.
       0.616
aIF-5A
Translation initiation factor IF-5a; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
       0.592
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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